oggmap ncbitax -h
usage: oggmap <sub-command> ncbitax [-h] [-u] [-outdir OUTDIR] [-t T] [-dbname DBNAME] [-chunk CHUNK] [-force] [-verbose]
options:
-h, --help show this help message and exit
-u update
-outdir OUTDIR output directory option for taxadb2 download
-t T type option for taxadb2 download (default: taxa)
-dbname DBNAME dbname option for taxadb2 create (default: taxadb.sqlite)
-chunk CHUNK chunk option for taxadb2 create (default: 500)
-force force option for taxadb2 download (default: False)
-verbose increase verbosity (default: False)
ncbitax example:
#update ncbi taxonomy database:
ncbitax -u -outdir taxadb -type taxa -dbname taxadb.sqlite